PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059936001
Common NameGSBRNA2T00059936001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 351aa    MW: 39407.6 Da    PI: 9.8776
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059936001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.2e-1265113155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+ ++ a+++++g
  GSBRNA2T00059936001  65 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAASYDIAARRFRG 113
                          689***9788.8*********3.....5*************************98 PP

2B3105.62.5e-33182284196
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+ tpsdv+k++rlv+pk++ae+h         ++++++ + led++g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+
  GSBRNA2T00059936001 182 FEKTVTPSDVGKLNRLVIPKQHAEKHfplpvtvTPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFE 271
                          99*****************************996677899************************************************** PP

                          E-SSSEE..EEEE CS
                   B3  84 ldgrsefelvvkv 96 
                          +++  +++l++ +
  GSBRNA2T00059936001 272 RSSGPDRQLYIDW 284
                          9877888777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-665113IPR001471AP2/ERF domain
CDDcd000181.48E-2465120No hitNo description
SuperFamilySSF541714.58E-1665121IPR016177DNA-binding domain
PROSITE profilePS5103219.4866121IPR001471AP2/ERF domain
SMARTSM003802.1E-2766127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1966121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.7E-41175291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-33180284IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-29181273No hitNo description
PROSITE profilePS5086314.522182288IPR003340B3 DNA binding domain
SMARTSM010198.6E-27182288IPR003340B3 DNA binding domain
PfamPF023627.3E-30182284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDYSCLDDNT SNTSETLSMS KKTPSPPLPL PPAMRLYRMG SGGSSVVLDL ENGVETESSR  60
KLPSSRFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AASYDIAARR FRGRDAVTNF  120
KSPASDAESA FLEAHSKAEV VDMLRKHTYA DELRQSERKK RCEFSKTTVT NENDGVSREV  180
LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL PVTVTPSPTK GVLINLEDRT GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK NLRAGDVVCF ERSSGPDRQL YIDWKVRSGI EKITPVQNVV  300
RLFGVNIFNA TTTNANTNDV VGESGSKKRF REVDLFALGC SKKQAIINVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-5817928911119DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.52060.0flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059936001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013657121.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M50.0RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A078HFC40.0A0A078HFC4_BRANA; BnaA08g19490D protein
STRINGBra011002.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.10.0RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]